NOTE: The HyPhy GUI is no longer maintained and will be replaced in the near future with a JavaScript front-end. For those interested in a GUI experience, we recommend using HyPhy either via Datamonkey (for newer methods see the development version of Datamonkey) or from the command line on your local computer/server.

HyPhy depends on CMake version 3 or later for its build system. Before installing HyPhy, please make sure that an appropriate version of CMake has been installed. Some HyPhy configurations also depends on other development libraries like libcurl and libpthread. Libcurl requires development libraries such as crypto++ and openssl (or gnutls depending on your configuration). On Ubuntu these are libcurl-dev, libcrypto++-dev and libssl-dev.

You can obtain HyPhy source in two ways:

• Download a the latest HyPhy release from the HyPhy github repository.
• Download the master branch of HyPhy by cloning the repository by entering this command into a terminal session:
git clone git@github.com:veg/hyphy.git